STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_003977DUF1777-domain-containing protein. (181 aa)    
Predicted Functional Partners:
LENED_003782
U4 tri-snrnp-associated protein 1.
    
 0.934
LENED_005890
U6 snRNA-associated Sm-like protein LSm7.
    
 0.923
LENED_011323
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.915
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
   
  0.908
LENED_007022
Small nuclear ribonucleoprotein Sm D3.
   
 0.900
LENED_009885
U4 u6 small nuclear ribonucleoprotein.
   
 0.898
LENED_011540
Small nuclear ribonucleoprotein Sm D2.
   
  0.896
LENED_005997
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
  0.887
LENED_003483
Small nuclear ribonucleo protein.
   
  0.886
LENED_001414
Sm-like ribonucleo protein.
   
  0.884
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.