STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_004123APG6-domain-containing protein. (355 aa)    
Predicted Functional Partners:
LENED_000997
Phosphoinositide 3-kinase regulatory subunit 4.
  
 
 0.995
LENED_001050
Other ulk ulk protein kinase.
    
 0.978
LENED_001051
Other ulk ulk protein kinase.
    
 0.978
LENED_002485
Phosphatidylinositol 3-kinase VPS34.
    
 0.974
LENED_002484
Phosphatidylinositol 3-kinase VPS34.
    
 0.974
LENED_002812
Atypical pikk pi3k protein kinase; Belongs to the PI3/PI4-kinase family.
    
 0.974
LENED_011337
Uv radiation resistance-associated protein.
    
 0.973
LENED_011336
Uv radiation resistance-associated protein.
    
 0.973
LENED_001712
Alpha beta-hydrolase.
    
 
 0.926
LENED_008936
Alpha beta-hydrolase.
    
 
 0.926
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.