STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_004058Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (290 aa)    
Predicted Functional Partners:
LENED_003550
Nonribosomal peptide synthetase 12.
 
 
  0.900
LENED_012190
Ferredoxin.
   
 0.710
LENED_008911
3-keto sterol reductase.
     
 0.704
LENED_003440
NAD-binding protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
0.686
LENED_007437
Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.
    
0.671
LENED_000350
4-nitrophenylphosphatase.
     
 0.658
LENED_000271
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
 
   
 0.613
LENED_004243
Purine nucleotide binding protein.
    
 
 0.579
LENED_002249
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.577
LENED_006508
Uncharacterized protein.
   
 0.577
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.