STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_004458Uncharacterized protein. (218 aa)    
Predicted Functional Partners:
LENED_002458
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the small GTPase superfamily. Arf family.
     
 0.688
LENED_010512
COG3 protein.
     
 0.532
LENED_011352
RIC1-domain-containing protein.
     
 0.522
LENED_011351
RIC1-domain-containing protein.
     
 0.522
LENED_012078
RIC1-domain-containing protein.
     
 0.522
LENED_000393
Vps52 sac2 family protein.
     
 0.499
LENED_000395
Vps52 sac2 family protein.
     
 0.499
LENED_010867
P-loop containing nucleoside triphosphate hydrolase protein.
      
 0.422
LENED_000538
Uncharacterized protein.
      
 0.420
LENED_001764
Rhamnose mutarotase.
      
 0.420
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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