STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_005429Protein transporter SEC9. (344 aa)    
Predicted Functional Partners:
LENED_002548
Synaptobrevin-like protein.
   
 0.978
LENED_008561
Syntaxin-like protein.
   
 0.978
LENED_006317
Sec1-like snare protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.961
LENED_011190
VAMP synaptobrevin-like protein; Belongs to the synaptobrevin family.
    
 0.951
LENED_005315
Vesicular-fusion protein SEC17.
    
 
 0.933
LENED_002825
DUF2263 domain-containing protein.
    
 0.928
LENED_012361
Snare domain protein; Belongs to the syntaxin family.
    
 0.928
LENED_002576
Vesicular-fusion protein sec18.
   
 
 0.899
LENED_009091
Rna-binding protein.
    
 0.894
LENED_000184
Wd40 containing snare-dependent exocytosis protein.
    
 
 0.882
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.