STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_005471Vacuolar amino acid transporter 4. (628 aa)    
Predicted Functional Partners:
LENED_001752
Ras-related gtp binding a.
   
 0.741
LENED_008297
Elongation factor 2.
    
 0.712
LENED_012274
Gtr1 g protein gtr2.
    
 0.694
LENED_012273
Gtr1 g protein gtr2.
    
 0.694
LENED_007618
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
    
 0.604
LENED_001428
V-type proton ATPase subunit; Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The active enzyme consists of a catalytic V1 domain attached to an integral membrane V0 proton pore complex. This subunit is a non-integral membrane component of the membrane pore domain and is required for proper assembly of the V0 sector. Might be involved in the regulated assembly of V1 subunits onto the membrane sector or alternatively may prevent the passage of protons through V0 pores; Belongs to the V-ATPase V0D/AC39 subunit family.
    
 0.578
LENED_002857
Serine/threonine-protein kinase TOR.
    
 0.574
LENED_002856
Non-specific serine/threonine protein kinase; Belongs to the PI3/PI4-kinase family.
    
 0.574
LENED_000656
Paired amphipathic helix protein pst1.
    
 0.564
LENED_008374
Thioredoxin-like_fold domain-containing protein.
    
 0.564
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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