STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_006071KH domain-containing protein. (1175 aa)    
Predicted Functional Partners:
Gb1
Guanine nucleotide binding protein beta subunit.
   
 
 0.759
LENED_003737
Ribosome associated chaperone.
   
   0.702
LENED_005453
Elongation factor 1-gamma.
   
   0.664
LENED_006094
Mrna export factor elf1.
   
   0.633
LENED_008604
Elongation factor 3.
   
   0.600
LENED_011659
ATP-dependent RNA helicase dhh1.
   
 
 0.557
LENED_012354
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 
 0.522
LENED_012229
Topoisomerase ii.
    
   0.517
LENED_009926
Protein.
   
    0.499
LENED_001061
Zz-type zinc finger-containing protein 3-like.
    
   0.465
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.