STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_006377Acetamidase formamidase. (314 aa)    
Predicted Functional Partners:
LENED_001364
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
  
 0.947
LENED_001187
Dna mismatch repair protein.
    
 0.911
LENED_001188
Dna mismatch repair protein.
    
 0.911
LENED_003984
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR); Belongs to the peptidase A1 family.
  
 0.892
LENED_004431
Like protein.
  
 0.892
LENED_007573
Dna mismatch repair protein msh5.
  
 0.890
LENED_009105
DNA mismatch repair protein.
  
 0.884
LENED_011479
Dna mismatch repair protein.
  
 0.884
LENED_011478
Dna mismatch repair protein.
  
 0.884
LENED_003281
Atp-depentend dna.
  
 
 0.864
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.