STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_006664Pre-rrna processing protein. (756 aa)    
Predicted Functional Partners:
LENED_006679
GTP binding protein.
   
 
 0.981
LENED_009682
Brix-domain-containing protein.
   
   0.969
LENED_009339
WD40 repeat-like protein.
   
 
 0.912
LENED_006762
BING4CT-domain-containing protein.
   
   0.891
LENED_002929
Utp21-domain-containing protein.
   
 
 0.887
LENED_001873
U3 small nucleolar RNA-associated protein 10.
   
   0.878
LENED_011688
TRAUB-domain-containing protein.
   
 
 0.860
LENED_003315
Ribosome biogenesis.
   
 
0.846
LENED_006186
U3 snornp-associated protein rrp5.
   
   0.844
LENED_001487
RNA helicase.
   
 
 0.841
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.