STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_007103Velvet domain-containing protein. (277 aa)    
Predicted Functional Partners:
LENED_008297
Elongation factor 2.
    
  0.719
LENED_003629
Delta 5 fatty acid desaturase.
    
  0.715
RPS0
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
  0.712
LENED_011863
Histone acetyltransferase type B subunit 2.
    
 0.705
LENED_006042
SSU ribosomal protein S9P.
    
  0.702
LENED_007287
37s ribosomal protein mrp17.
    
  0.702
LENED_007966
Ribosomal protein S16.
   
  0.699
LENED_001524
Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.
   
  0.696
LENED_004413
L51_S25_CI-B8 domain-containing protein.
    
  0.694
LENED_010069
Mitochondrial carrier protein.
    
  0.693
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.