STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_008509Endoplasmic reticulum protein. (525 aa)    
Predicted Functional Partners:
LENED_005372
DNA polymerase.
 
      0.775
LENED_005371
DNA polymerase.
 
      0.761
LENED_005370
DNA polymerase.
 
      0.746
LENED_007569
VAMP-associated protein.
    
 0.610
LENED_004778
Acid protease; Belongs to the peptidase A1 family.
   
  0.600
LENED_008741
Mitochondrial Rho GTPase 1.
     
 0.493
LENED_002888
DUF1713 domain-containing protein.
     
 0.447
LENED_010966
Pxa domain-containing protein.
      
 0.416
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.