STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_008524Nup188_C domain-containing protein. (1885 aa)    
Predicted Functional Partners:
LENED_006237
Nuclear pore protein.
   
 0.971
LENED_003225
Uncharacterized protein.
  
 0.968
LENED_007983
Nucleoporin.
  
 0.957
LENED_005063
D-lactonohydrolase-like protein.
    
 0.922
LENED_006236
Nuclear pore protein.
   
 0.909
LENED_003429
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.889
LENED_004961
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.866
LENED_012550
Methyltransferase type 11.
   
 0.865
LENED_012693
Nuclear pore glycoprotein p62.
    
 0.844
LENED_012849
PARP catalytic domain-containing protein.
   
 0.836
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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