STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_009016General amidase. (567 aa)    
Predicted Functional Partners:
LENED_003477
Aspartyl-trna synthetase.
  
 0.835
LENED_000427
Glutamine-tRNA ligase.
  
 0.788
LENED_000426
Glutamine-tRNA ligase.
  
 0.788
LENED_004885
Glutamyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.788
LENED_008873
Glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.788
LENED_000618
Asparaginyl-trna synthetase.
   
 0.758
LENED_006807
Aspartate-tRNA ligase.
   
 0.758
LENED_008026
Aspartate-trna ligase.
   
 0.758
LENED_009666
NAD-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.692
LENED_001022
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.688
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.