STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_009029Vhs domain protein. (272 aa)    
Predicted Functional Partners:
LENED_005555
CPS1 protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.864
LENED_009622
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.739
LENED_012834
Mannose 6-phosphate receptor domain-containing protein.
    
 
 0.665
LENED_012825
Cyclohexanone monooxygenase.
    
 0.613
LENED_002001
Ubiquitin-domain-containing protein.
    
   0.591
LENED_007306
Ubiquitin C.
    
   0.565
LENED_007305
Polyubiquitin Ubi4.
    
   0.565
LENED_011525
Ubiquitin.
    
   0.565
LENED_001605
SH3-domain-containing protein.
    
 0.563
LENED_012833
SH3-domain-containing protein.
    
 0.563
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.