STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_009628Uncharacterized protein. (481 aa)    
Predicted Functional Partners:
LENED_012627
Smg4_UPF3 domain-containing protein.
   
 0.928
LENED_004946
RNA-binding domain-containing protein.
    
 0.925
LENED_005251
PWI domain-containing protein.
    
 
 0.818
LENED_003474
Polyadenylate-binding protein 2.
    
 0.810
LENED_003467
Protein.
    
 0.810
LENED_000801
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.788
LENED_000796
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.788
LENED_001134
Rna-directed rna polymerase.
   
 0.788
LENED_012122
Atp-dependent helicase nam7.
   
 0.788
LENED_012338
ATP dependent helicase.
   
 0.788
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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