STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_010512COG3 protein. (1062 aa)    
Predicted Functional Partners:
LENED_009743
Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.
   
 0.991
LENED_007041
COG complex component.
   
 0.990
LENED_000276
Vps51 Vps67 domain-containing protein.
   
 0.989
LENED_003592
Intra-golgi transport-related protein.
    
 0.989
LENED_006858
Dor1-domain-containing protein.
    
 0.976
LENED_006857
Dor1-domain-containing protein.
    
 0.976
LENED_006059
Component of oligomeric golgi complex 7.
    
 0.967
LENED_006060
Component of oligomeric golgi complex 7.
    
 0.967
LENED_008182
Gtp-binding protein ypt1.
   
 0.881
LENED_009013
Integral membrane protein sed5.
    
 0.860
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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