STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_010919E3 ubiquitin-protein ligase PEP5. (1049 aa)    
Predicted Functional Partners:
LENED_002629
Vacuolar assembling protein VPS41.
   
 0.992
LENED_007927
Vacuolar protein sorting protein.
   
 0.992
LENED_010786
Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.
    
 0.977
LENED_010787
Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.
    
 0.977
LENED_007816
Ras-domain-containing protein.
    
 
 0.957
LENED_009834
Rab guanyl-nucleotide exchange factor.
   
 0.956
LENED_009832
Rab guanyl-nucleotide exchange factor.
   
 0.956
LENED_009833
Rab guanyl-nucleotide exchange factor.
   
 0.956
LENED_012361
Snare domain protein; Belongs to the syntaxin family.
   
 
 0.955
LENED_007000
Transforming growth factor-beta receptor-associated protein 1.
   
 0.948
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.