STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_011242Pyridoxal-dependent decarboxylase domain protein. (1336 aa)    
Predicted Functional Partners:
LENED_009116
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
    
 0.847
LENED_011802
Tryptophan synthase.
    
 0.782
LENED_006309
PLP-dependent transferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.721
LENED_002535
Pantoate-beta-alanine ligase.
  
 
 0.712
LENED_002388
Succinate-semialdehyde dehydrogenase.
   
 0.699
LENED_001699
Cytochrome b5; Belongs to the cytochrome b5 family.
   
 
  0.656
LENED_003629
Delta 5 fatty acid desaturase.
   
 
 0.656
LENED_002548
Synaptobrevin-like protein.
    
 0.647
LENED_004547
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.630
LENED_008219
NADPH-dependent glutamate synthase.
     
 0.609
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.