STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_011338Rna-binding protein. (968 aa)    
Predicted Functional Partners:
LENED_001658
CAF1-domain-containing protein.
    
 
 0.719
LENED_011659
ATP-dependent RNA helicase dhh1.
    
 
 0.659
LENED_012918
Ccr4-not complex subunit ccr4.
    
 
 0.645
LENED_009097
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
   
   0.613
LENED_008960
Rho gtpase activator.
    
 
 0.575
LENED_008172
Pre-mRNA-processing protein 45.
    
  0.567
LENED_005200
Pre-mrna-splicing factor clf1.
    
  0.542
LENED_002767
Pre-mRNA-splicing factor SLT11.
     
 0.529
LENED_005601
Puf family rna-binding protein.
    
 
 0.525
LENED_001502
RNB-domain-containing protein.
   
   0.489
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.