STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_012393Riboflavin kinase. (232 aa)    
Predicted Functional Partners:
LENED_001753
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
 
 0.979
LENED_000199
Lumazine-binding protein.
  
 
 0.862
LENED_011677
Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.
   
 0.842
LENED_011752
Adenine nucleotide alpha hydrolases-like protein.
    
 0.838
LENED_012611
Molybdopterin binding protein.
    
 0.806
LENED_002382
Phosphoadenosine phosphosulfate reductase.
    
 0.779
LENED_002570
Epoxide hydrolase.
  
 
 0.775
LENED_007331
Alpha beta-hydrolase.
  
 
 0.775
LENED_000641
Gtp binding protein.
  
 
 0.767
LENED_002420
Coronin; Belongs to the WD repeat coronin family.
  
 
 0.767
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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