STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH85300.1Putative RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR014284:IPR000792:IPR007627:IPR013249; KEGG: mlo:mlr4613 ECF family RNA polymerase sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (419 aa)    
Predicted Functional Partners:
AEH85301.1
YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: mlo:mlr4612 hypothetical protein; PFAM: YCII-related; SPTR: YCII-related protein; PFAM: YCII-related domain.
 
     0.933
AEH86524.1
YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: mlo:mll2871 hypothetical protein; PFAM: YCII-related; SPTR: YCII-related protein; PFAM: YCII-related domain.
 
     0.790
AEH85549.1
YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: mlo:mll4253 hypothetical protein; PFAM: YCII-related; SPTR: YCII-related protein; PFAM: YCII-related domain.
 
     0.789
AEH86435.1
YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: mlo:mlr2988 hypothetical protein; PFAM: YCII-related; SPTR: YCII-related protein; PFAM: YCII-related domain.
 
     0.763
AEH84527.1
Glyoxalase/bleomycin resistance protein/dioxygenase; COGs: COG2764 conserved hypothetical protein; InterPro IPR004360; KEGG: mlo:mlr5539 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
 
     0.491
AEH90036.1
Protein of unknown function DUF2277; COGs: COG5552 conserved hypothetical protein; InterPro IPR018735; KEGG: mlo:msr7471 hypothetical protein; PFAM: Protein of unknown function DUF2277; SPTR: Msr7471 protein; PFAM: Uncharacterized conserved protein (DUF2277).
  
     0.481
AEH88327.1
Glyoxalase/bleomycin resistance protein/dioxygenase; COGs: COG2764 conserved hypothetical protein; InterPro IPR004360; KEGG: mlo:mlr1197 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
 
     0.425
AEH85302.1
TRAP transporter solute receptor, TAXI family; COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: mes:Meso_4067 TRAP transporter solute receptor TAXI family protein; SPTR: TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family; PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family.
       0.408
Your Current Organism:
Mesorhizobium opportunistum
NCBI taxonomy Id: 536019
Other names: M. opportunistum WSM2075, Mesorhizobium opportunistum WSM2075, Mesorhizobium opportunistum str. WSM2075, Mesorhizobium opportunistum strain WSM2075, Mesorhizobium sp. LMG 24607, Mesorhizobium sp. WSM2075
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