STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH85937.1RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR000838:IPR007627:IPR013249; KEGG: mlo:mll3697 RNA polymerase sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)    
Predicted Functional Partners:
AEH85936.1
KEGG: mlo:msl3698 hypothetical protein; SPTR: Putative uncharacterized protein.
   
   0.895
AEH85935.1
Response regulator receiver protein; InterPro IPR014605:IPR001789; KEGG: mlo:mlr3700 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain.
 
  
 0.893
AEH85129.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: mlo:mll4824 RNA polymerase sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
   
 0.688
AEH85933.1
COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011102; KEGG: mlo:mlr3704 sensory transduction histidine kinase; PFAM: HWE histidine kinase; SPTR: Signal transduction histidine kinase; PFAM: HWE histidine kinase.
 
   
 0.659
AEH90887.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000014:IPR002052:IPR000780:IPR000673:IPR 013656:IPR011102:IPR000700; KEGG: bid:Bind_0707 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; PFAM: HWE histidine kinase; CheB methylesterase; MCP methyltransferase CheR-type; PAS fold-4 domain protein; SMART: MCP methyltransferase CheR-type; SPTR: MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; CheR methy [...]
   
 
 0.572
AEH90712.1
COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterPro IPR000873:IPR003679:IPR020845; KEGG: mlo:mlr6282 phosphinothricin tripeptide synthetase B; PFAM: AMP-dependent synthetase and ligase; aminoglycoside 3-N-acetyltransferase; SPTR: AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; Aminoglycoside 3-N-acetyltransferase; TIGRFAM: amino acid adenylation domain.
  
  
 0.558
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.528
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.524
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.499
AEH86623.1
anti-ECFsigma factor, ChrR; COGs: COG3806 Transcriptional activator; KEGG: mlo:mlr7069 transcription negative regulator ChrR; SPTR: Anti-ECFsigma factor, ChrR.
  
 
 0.498
Your Current Organism:
Mesorhizobium opportunistum
NCBI taxonomy Id: 536019
Other names: M. opportunistum WSM2075, Mesorhizobium opportunistum WSM2075, Mesorhizobium opportunistum str. WSM2075, Mesorhizobium opportunistum strain WSM2075, Mesorhizobium sp. LMG 24607, Mesorhizobium sp. WSM2075
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