STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH89745.1Protein of unknown function DUF88; COGs: COG1432 conserved hypothetical protein; InterPro IPR002790; KEGG: mlo:mll7752 hypothetical protein; PFAM: protein of unknown function DUF88; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF88. (193 aa)    
Predicted Functional Partners:
AEH89746.1
COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122; KEGG: mlo:mll7751 hypothetical protein; PFAM: Uracil-DNA glycosylase superfamily; SPTR: Uracil-DNA glycosylase superfamily; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4.
       0.778
trmB
Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.749
AEH86058.1
Methyltransferase type 11; InterPro IPR013216; KEGG: mlo:mll3545 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain.
 
     0.624
AEH89646.1
COGs: COG2927 DNA polymerase III chi subunit; InterPro IPR007459; KEGG: mlo:mlr7869 DNA polymerase III subunit chi; PFAM: DNA polymerase III chi subunit HolC; SPTR: DNA polymerase III chi subunit HolC; PFAM: DNA polymerase III chi subunit, HolC.
  
     0.592
AEH89719.1
Conserved hypothetical protein; COGs: COG1896 hydrolase of HD superfamily; KEGG: mlo:mll7788 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.555
AEH84525.1
Transcriptional regulator, XRE family; InterPro IPR001387; KEGG: mlo:mlr5544 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix.
  
     0.504
pheT
COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR002547:IPR005121:IPR005146:IPR005147:IPR 004532; KEGG: mlo:mll5053 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/4 domain protein; t-RNA-binding domain protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; SPTR: Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial.
     
 0.497
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.481
rpoZ-2
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.474
AEH89356.1
Transcriptional regulator, MarR family; InterPro IPR000835; KEGG: mlo:mlr8394 transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator, MarR family.
  
     0.440
Your Current Organism:
Mesorhizobium opportunistum
NCBI taxonomy Id: 536019
Other names: M. opportunistum WSM2075, Mesorhizobium opportunistum WSM2075, Mesorhizobium opportunistum str. WSM2075, Mesorhizobium opportunistum strain WSM2075, Mesorhizobium sp. LMG 24607, Mesorhizobium sp. WSM2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.