STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C3MMC3Uncharacterized protein. (184 aa)    
Predicted Functional Partners:
A0A5C3NBD3
Uncharacterized protein.
    
 0.867
A0A5C3NIQ0
Putative rRNA pseudouridine synthase.
    
 0.791
A0A5C3NBC9
Pseudouridine synthase.
    
 0.763
A0A5C3MSC0
Uncharacterized protein.
   
 0.747
A0A5C3N2Z5
WD40 repeat-like protein.
    
 0.733
A0A5C3NPV2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.711
A0A5C3NB21
Uncharacterized protein.
   
 
 0.696
A0A5C3NDD3
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
     
 0.691
A0A5C3NGB4
Nop10 family nucleolar RNA-binding protein.
     
 0.690
A0A5C3MR79
SPOC domain-like protein.
   
 
 0.686
Your Current Organism:
Heliocybe sulcata
NCBI taxonomy Id: 5364
Other names: H. sulcata, Lentinus sulcatus
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