STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C3MMJ9RING-type domain-containing protein. (713 aa)    
Predicted Functional Partners:
A0A5C3N0V0
SWIB-domain-containing protein.
 
      0.810
A0A5C3NK60
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.738
A0A5C3MNN0
Uncharacterized protein.
   
 
 0.668
A0A5C3NEN5
Sec63-domain-containing protein.
    
 
 0.665
A0A5C3MVZ1
RING-type domain-containing protein.
    
 
 0.640
A0A5C3N301
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
    0.640
A0A5C3MXX1
Ribosomal protein S1.
    
 
 0.634
A0A5C3MZ33
Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.634
A0A5C3N7A6
WD40 repeat-like protein.
 
      0.634
A0A5C3NL05
Guanine nucleotide binding protein beta subunit.
    
 
 0.626
Your Current Organism:
Heliocybe sulcata
NCBI taxonomy Id: 5364
Other names: H. sulcata, Lentinus sulcatus
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