A0A5C3MU47 protein (Heliocybe sulcata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3MU47

AAA-domain-containing protein. (788 aa)

Predicted Functional Partners:

A0A5C3N0G5

0.959

A0A5C3N1D9

0.959

A0A5C3NJL3

0.959

A0A5C3NCM3

0.958

A0A5C3MWT7

0.956

A0A5C3NAI2

0.950

A0A5C3NE89

0.946

A0A5C3MVF8

0.939

A0A5C3NDA5

0.936

A0A5C3MSE2

0.927

Your Current Organism:

Heliocybe sulcata

NCBI taxonomy Id: 5364
Other names: H. sulcata, Lentinus sulcatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3MSE2	A0A5C3MU47	UBX domain-containing protein.	AAA-domain-containing protein.	0.927
A0A5C3MSE2	A0A5C3MVF8	UBX domain-containing protein.	UBX domain-containing protein.	0.968
A0A5C3MSE2	A0A5C3MWT7	UBX domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.657
A0A5C3MSE2	A0A5C3N1D9	UBX domain-containing protein.	SEP-domain-containing protein.	0.958
A0A5C3MSE2	A0A5C3NAI2	UBX domain-containing protein.	RING-type domain-containing protein.	0.928
A0A5C3MSE2	A0A5C3NCM3	UBX domain-containing protein.	Ubiquitin fusion degradation protein I.	0.963
A0A5C3MSE2	A0A5C3NDA5	UBX domain-containing protein.	PRKCSH domain-containing protein.	0.939
A0A5C3MSE2	A0A5C3NE89	UBX domain-containing protein.	OTU domain-containing protein.	0.460
A0A5C3MSE2	A0A5C3NJL3	UBX domain-containing protein.	Polyubiquitin-tagged protein recognition complex Npl4 component.	0.958
A0A5C3MU47	A0A5C3MSE2	AAA-domain-containing protein.	UBX domain-containing protein.	0.927
A0A5C3MU47	A0A5C3MVF8	AAA-domain-containing protein.	UBX domain-containing protein.	0.939
A0A5C3MU47	A0A5C3MWT7	AAA-domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.956
A0A5C3MU47	A0A5C3N0G5	AAA-domain-containing protein.	Proliferation-associated protein 1.	0.959
A0A5C3MU47	A0A5C3N1D9	AAA-domain-containing protein.	SEP-domain-containing protein.	0.959
A0A5C3MU47	A0A5C3NAI2	AAA-domain-containing protein.	RING-type domain-containing protein.	0.950
A0A5C3MU47	A0A5C3NCM3	AAA-domain-containing protein.	Ubiquitin fusion degradation protein I.	0.958
A0A5C3MU47	A0A5C3NDA5	AAA-domain-containing protein.	PRKCSH domain-containing protein.	0.936
A0A5C3MU47	A0A5C3NE89	AAA-domain-containing protein.	OTU domain-containing protein.	0.946
A0A5C3MU47	A0A5C3NJL3	AAA-domain-containing protein.	Polyubiquitin-tagged protein recognition complex Npl4 component.	0.959
A0A5C3MVF8	A0A5C3MSE2	UBX domain-containing protein.	UBX domain-containing protein.	0.968