A0A5C3MV39 protein (Heliocybe sulcata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3MV39

HIT-like protein. (179 aa)

Predicted Functional Partners:

A0A5C3N2J5

0.811

A0A5C3MMS2

0.739

A0A5C3NLB0

0.739

A0A5C3N1U6

0.734

A0A5C3NKC8

0.719

A0A5C3NVC5

0.719

A0A5C3NFC2

0.714

A0A5C3NFK2

0.703

A0A5C3NIY2

0.651

A0A5C3NMA8

0.639

Your Current Organism:

Heliocybe sulcata

NCBI taxonomy Id: 5364
Other names: H. sulcata, Lentinus sulcatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3MMS2	A0A5C3MV39	TBP-domain-containing protein.	HIT-like protein.	0.739
A0A5C3MMS2	A0A5C3N1U6	TBP-domain-containing protein.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.992
A0A5C3MMS2	A0A5C3NFC2	TBP-domain-containing protein.	RNA polymerase I-specific transcription initiation factor RRN3.	0.847
A0A5C3MMS2	A0A5C3NFK2	TBP-domain-containing protein.	CDK-activating kinase assembly factor.	0.971
A0A5C3MMS2	A0A5C3NIY2	TBP-domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.975
A0A5C3MMS2	A0A5C3NKC8	TBP-domain-containing protein.	SprT-like domain-containing protein.	0.747
A0A5C3MMS2	A0A5C3NMA8	TBP-domain-containing protein.	Cyclin-like protein; Belongs to the cyclin family.	0.931
A0A5C3MMS2	A0A5C3NVC5	TBP-domain-containing protein.	Uncharacterized protein.	0.747
A0A5C3MV39	A0A5C3MMS2	HIT-like protein.	TBP-domain-containing protein.	0.739
A0A5C3MV39	A0A5C3N1U6	HIT-like protein.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.734
A0A5C3MV39	A0A5C3N2J5	HIT-like protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.811
A0A5C3MV39	A0A5C3NFC2	HIT-like protein.	RNA polymerase I-specific transcription initiation factor RRN3.	0.714
A0A5C3MV39	A0A5C3NFK2	HIT-like protein.	CDK-activating kinase assembly factor.	0.703
A0A5C3MV39	A0A5C3NIY2	HIT-like protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.651
A0A5C3MV39	A0A5C3NKC8	HIT-like protein.	SprT-like domain-containing protein.	0.719
A0A5C3MV39	A0A5C3NLB0	HIT-like protein.	BTB domain-containing protein.	0.739
A0A5C3MV39	A0A5C3NMA8	HIT-like protein.	Cyclin-like protein; Belongs to the cyclin family.	0.639
A0A5C3MV39	A0A5C3NVC5	HIT-like protein.	Uncharacterized protein.	0.719
A0A5C3N1U6	A0A5C3MMS2	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	TBP-domain-containing protein.	0.992
A0A5C3N1U6	A0A5C3MV39	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	HIT-like protein.	0.734