A0A5C3N1M4 protein (Heliocybe sulcata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3N1M4

Uncharacterized protein. (353 aa)

Predicted Functional Partners:

A0A5C3NF08

0.878

A0A5C3NJU3

0.848

A0A5C3NBP5

0.847

A0A5C3N338

0.615

A0A5C3NFD5

0.615

A0A5C3N6N6

0.606

A0A5C3MW73

0.604

A0A5C3MYD0

0.604

A0A5C3N3R5

0.604

A0A5C3N6S7

0.604

Your Current Organism:

Heliocybe sulcata

NCBI taxonomy Id: 5364
Other names: H. sulcata, Lentinus sulcatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3MW73	A0A5C3N1M4	Acetyl-CoA synthetase-like protein.	Uncharacterized protein.	0.604
A0A5C3MW73	A0A5C3NJU3	Acetyl-CoA synthetase-like protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.829
A0A5C3MYD0	A0A5C3N1M4	AMP binding protein.	Uncharacterized protein.	0.604
A0A5C3MYD0	A0A5C3NJU3	AMP binding protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.829
A0A5C3N1M4	A0A5C3MW73	Uncharacterized protein.	Acetyl-CoA synthetase-like protein.	0.604
A0A5C3N1M4	A0A5C3MYD0	Uncharacterized protein.	AMP binding protein.	0.604
A0A5C3N1M4	A0A5C3N338	Uncharacterized protein.	Uncharacterized protein.	0.615
A0A5C3N1M4	A0A5C3N3R5	Uncharacterized protein.	Acetyl-CoA synthetase-like protein.	0.604
A0A5C3N1M4	A0A5C3N6N6	Uncharacterized protein.	Acetyl-CoA synthetase-like protein.	0.606
A0A5C3N1M4	A0A5C3N6S7	Uncharacterized protein.	Acetyl-CoA synthetase-like protein.	0.604
A0A5C3N1M4	A0A5C3NBP5	Uncharacterized protein.	Tryptophan synthase.	0.847
A0A5C3N1M4	A0A5C3NF08	Uncharacterized protein.	Histidine biosynthesis trifunctional protein.	0.878
A0A5C3N1M4	A0A5C3NFD5	Uncharacterized protein.	4'-phosphopantetheinyl transferase.	0.615
A0A5C3N1M4	A0A5C3NJU3	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.848
A0A5C3N338	A0A5C3N1M4	Uncharacterized protein.	Uncharacterized protein.	0.615
A0A5C3N338	A0A5C3NJU3	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.820
A0A5C3N3R5	A0A5C3N1M4	Acetyl-CoA synthetase-like protein.	Uncharacterized protein.	0.604
A0A5C3N3R5	A0A5C3NJU3	Acetyl-CoA synthetase-like protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.829
A0A5C3N6N6	A0A5C3N1M4	Acetyl-CoA synthetase-like protein.	Uncharacterized protein.	0.606
A0A5C3N6N6	A0A5C3NJU3	Acetyl-CoA synthetase-like protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.829