A0A5C3N5I0 protein (Heliocybe sulcata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3N5I0

Fcf2-domain-containing protein. (284 aa)

Predicted Functional Partners:

A0A5C3N1Q5

0.994

A0A5C3N4T7

0.992

A0A5C3NJQ0

0.992

A0A5C3MY15

0.991

A0A5C3MPM7

0.990

A0A5C3NB79

0.990

A0A5C3NJ67

0.990

A0A5C3MIU8

0.988

A0A5C3NFT3

0.988

A0A5C3NJF0

0.988

Your Current Organism:

Heliocybe sulcata

NCBI taxonomy Id: 5364
Other names: H. sulcata, Lentinus sulcatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3MIU8	A0A5C3MPM7	BING4CT-domain-containing protein.	Uncharacterized protein.	0.997
A0A5C3MIU8	A0A5C3MY15	BING4CT-domain-containing protein.	DUF663-domain-containing protein.	0.998
A0A5C3MIU8	A0A5C3N1Q5	BING4CT-domain-containing protein.	TRAUB-domain-containing protein.	0.997
A0A5C3MIU8	A0A5C3N4T7	BING4CT-domain-containing protein.	Sas10 domain-containing protein.	0.999
A0A5C3MIU8	A0A5C3N5I0	BING4CT-domain-containing protein.	Fcf2-domain-containing protein.	0.988
A0A5C3MIU8	A0A5C3NB79	BING4CT-domain-containing protein.	Utp21-domain-containing protein.	0.998
A0A5C3MIU8	A0A5C3NFT3	BING4CT-domain-containing protein.	Brix-domain-containing protein.	0.992
A0A5C3MIU8	A0A5C3NJ67	BING4CT-domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.997
A0A5C3MIU8	A0A5C3NJF0	BING4CT-domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
A0A5C3MIU8	A0A5C3NJQ0	BING4CT-domain-containing protein.	Small-subunit processome.	0.999
A0A5C3MPM7	A0A5C3MIU8	Uncharacterized protein.	BING4CT-domain-containing protein.	0.997
A0A5C3MPM7	A0A5C3MY15	Uncharacterized protein.	DUF663-domain-containing protein.	0.997
A0A5C3MPM7	A0A5C3N1Q5	Uncharacterized protein.	TRAUB-domain-containing protein.	0.997
A0A5C3MPM7	A0A5C3N4T7	Uncharacterized protein.	Sas10 domain-containing protein.	0.993
A0A5C3MPM7	A0A5C3N5I0	Uncharacterized protein.	Fcf2-domain-containing protein.	0.990
A0A5C3MPM7	A0A5C3NB79	Uncharacterized protein.	Utp21-domain-containing protein.	0.994
A0A5C3MPM7	A0A5C3NFT3	Uncharacterized protein.	Brix-domain-containing protein.	0.990
A0A5C3MPM7	A0A5C3NJ67	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.988
A0A5C3MPM7	A0A5C3NJF0	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
A0A5C3MPM7	A0A5C3NJQ0	Uncharacterized protein.	Small-subunit processome.	0.996