A0A5C3N5S0 protein (Heliocybe sulcata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3N5S0

CK1/CK1 protein kinase. (526 aa)

Predicted Functional Partners:

A0A5C3NGQ3

0.919

A0A5C3NDQ8

0.855

A0A5C3NL68

0.853

A0A5C3N8C1

0.786

A0A5C3NGI4

0.762

A0A5C3NK60

0.736

A0A5C3NE33

0.735

A0A5C3NAP0

0.719

A0A5C3N0L3

0.716

A0A5C3NBI6

0.710

Your Current Organism:

Heliocybe sulcata

NCBI taxonomy Id: 5364
Other names: H. sulcata, Lentinus sulcatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3N0L3	A0A5C3N5S0	Fungal pheromone STE3G-protein-coupled receptor.	CK1/CK1 protein kinase.	0.716
A0A5C3N5S0	A0A5C3N0L3	CK1/CK1 protein kinase.	Fungal pheromone STE3G-protein-coupled receptor.	0.716
A0A5C3N5S0	A0A5C3N8C1	CK1/CK1 protein kinase.	DUF663-domain-containing protein.	0.786
A0A5C3N5S0	A0A5C3NAP0	CK1/CK1 protein kinase.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.719
A0A5C3N5S0	A0A5C3NBI6	CK1/CK1 protein kinase.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.710
A0A5C3N5S0	A0A5C3NDQ8	CK1/CK1 protein kinase.	Bystin-domain-containing protein.	0.855
A0A5C3N5S0	A0A5C3NE33	CK1/CK1 protein kinase.	Eukaryotic type KH-domain (KH-domain type I).	0.735
A0A5C3N5S0	A0A5C3NGI4	CK1/CK1 protein kinase.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.762
A0A5C3N5S0	A0A5C3NGQ3	CK1/CK1 protein kinase.	LTV-domain-containing protein.	0.919
A0A5C3N5S0	A0A5C3NK60	CK1/CK1 protein kinase.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.736
A0A5C3N5S0	A0A5C3NL68	CK1/CK1 protein kinase.	RIO1-domain-containing protein.	0.853
A0A5C3N8C1	A0A5C3N5S0	DUF663-domain-containing protein.	CK1/CK1 protein kinase.	0.786
A0A5C3N8C1	A0A5C3NAP0	DUF663-domain-containing protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.957
A0A5C3N8C1	A0A5C3NBI6	DUF663-domain-containing protein.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.997
A0A5C3N8C1	A0A5C3NDQ8	DUF663-domain-containing protein.	Bystin-domain-containing protein.	0.999
A0A5C3N8C1	A0A5C3NE33	DUF663-domain-containing protein.	Eukaryotic type KH-domain (KH-domain type I).	0.997
A0A5C3N8C1	A0A5C3NGI4	DUF663-domain-containing protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.999
A0A5C3N8C1	A0A5C3NGQ3	DUF663-domain-containing protein.	LTV-domain-containing protein.	0.999
A0A5C3N8C1	A0A5C3NK60	DUF663-domain-containing protein.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.980
A0A5C3N8C1	A0A5C3NL68	DUF663-domain-containing protein.	RIO1-domain-containing protein.	0.998