A0A5C3N622 protein (Heliocybe sulcata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3N622

HTH myb-type domain-containing protein. (343 aa)

Predicted Functional Partners:

A0A5C3N554

0.993

A0A5C3N4T9

0.974

A0A5C3MKX7

0.961

A0A5C3NLP9

0.940

A0A5C3NAJ8

0.829

A0A5C3NGQ2

0.803

A0A5C3N9T9

0.799

A0A5C3NA29

0.799

A0A5C3N9J3

0.791

A0A5C3MQS7

0.766

Your Current Organism:

Heliocybe sulcata

NCBI taxonomy Id: 5364
Other names: H. sulcata, Lentinus sulcatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3MKX7	A0A5C3N4T9	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.961
A0A5C3MKX7	A0A5C3N554	Uncharacterized protein.	SGF29 C-terminal domain-containing protein.	0.995
A0A5C3MKX7	A0A5C3N622	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.961
A0A5C3MKX7	A0A5C3N9T9	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A5C3MKX7	A0A5C3NA29	Uncharacterized protein.	Histone acetyltransferase GCN5.	0.968
A0A5C3MKX7	A0A5C3NGQ2	Uncharacterized protein.	Histone-fold-containing protein.	0.896
A0A5C3MKX7	A0A5C3NLP9	Uncharacterized protein.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.999
A0A5C3MQS7	A0A5C3N622	Heat shock protein 70; Belongs to the heat shock protein 70 family.	HTH myb-type domain-containing protein.	0.766
A0A5C3MQS7	A0A5C3N9J3	Heat shock protein 70; Belongs to the heat shock protein 70 family.	Heat shock protein 70.	0.908
A0A5C3MQS7	A0A5C3NAJ8	Heat shock protein 70; Belongs to the heat shock protein 70 family.	DnaJ-domain-containing protein.	0.997
A0A5C3N4T9	A0A5C3MKX7	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.961
A0A5C3N4T9	A0A5C3N554	N-acetyltransferase domain-containing protein.	SGF29 C-terminal domain-containing protein.	0.994
A0A5C3N4T9	A0A5C3N622	N-acetyltransferase domain-containing protein.	HTH myb-type domain-containing protein.	0.974
A0A5C3N4T9	A0A5C3N9T9	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.879
A0A5C3N4T9	A0A5C3NA29	N-acetyltransferase domain-containing protein.	Histone acetyltransferase GCN5.	0.879
A0A5C3N4T9	A0A5C3NGQ2	N-acetyltransferase domain-containing protein.	Histone-fold-containing protein.	0.949
A0A5C3N4T9	A0A5C3NLP9	N-acetyltransferase domain-containing protein.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.916
A0A5C3N554	A0A5C3MKX7	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.995
A0A5C3N554	A0A5C3N4T9	SGF29 C-terminal domain-containing protein.	N-acetyltransferase domain-containing protein.	0.994
A0A5C3N554	A0A5C3N622	SGF29 C-terminal domain-containing protein.	HTH myb-type domain-containing protein.	0.993