STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN72792.1Glycosyltransferase involved in cell wall bisynthesis. (270 aa)    
Predicted Functional Partners:
SIN72805.1
Glycosyltransferase involved in cell wall bisynthesis.
    0.910
SIN72817.1
Glycosyltransferase, GT2 family.
 
  
  0.863
SIN72775.1
Glycosyl transferase family 11.
       0.774
SIN72764.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.570
SIO15835.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.480
SIO40795.1
UDP-galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
   
 0.431
SIN81621.1
Hypothetical protein.
 
  
  0.417
SIN81649.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
  
 0.404
hisB
Imidazoleglycerol-phosphate dehydratase; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family.
   
 0.404
Your Current Organism:
Chitinophaga niabensis
NCBI taxonomy Id: 536979
Other names: C. niabensis, Chitinophaga niabensis Weon et al. 2009 emend. Proenca et al. 2014, Chitinophaga sp. JS13-10, DSM 24787, JCM 15440, KACC 12952, strain JS13-10
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