STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN94679.1RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa)    
Predicted Functional Partners:
SIN94702.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
 
   0.708
SIO04144.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.613
SIO53581.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.607
SIO38847.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.603
SIO49354.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.602
SIN94918.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.589
SIO03259.1
RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.585
SIN68018.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.573
SIO09663.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.563
SIN67873.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.561
Your Current Organism:
Chitinophaga niabensis
NCBI taxonomy Id: 536979
Other names: C. niabensis, Chitinophaga niabensis Weon et al. 2009 emend. Proenca et al. 2014, Chitinophaga sp. JS13-10, DSM 24787, JCM 15440, KACC 12952, strain JS13-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.