STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN97005.1Starch-binding associating with outer membrane. (535 aa)    
Predicted Functional Partners:
SIN97025.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.948
SIN96985.1
SusE outer membrane protein.
 
 
   0.931
SIN96964.1
Predicted alpha-1,6-mannanase, GH76 family.
 
     0.853
SIO38158.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.801
SIN66323.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.792
SIO05330.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.787
SIN68242.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.784
SIN70557.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.782
SIO37859.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.777
SIO55060.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.777
Your Current Organism:
Chitinophaga niabensis
NCBI taxonomy Id: 536979
Other names: C. niabensis, Chitinophaga niabensis Weon et al. 2009 emend. Proenca et al. 2014, Chitinophaga sp. JS13-10, DSM 24787, JCM 15440, KACC 12952, strain JS13-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.