STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO04597.1Hypothetical protein. (419 aa)    
Predicted Functional Partners:
SIO04577.1
2-haloacid dehalogenase.
       0.590
SIO44554.1
PD-(D/E)XK nuclease superfamily protein.
 
     0.452
SIO38705.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.447
SIO48524.1
Hypothetical protein.
  
     0.422
SIO06948.1
Hypothetical protein.
  
     0.412
SIN68743.1
Protein of unknown function.
  
     0.406
Your Current Organism:
Chitinophaga niabensis
NCBI taxonomy Id: 536979
Other names: C. niabensis, Chitinophaga niabensis Weon et al. 2009 emend. Proenca et al. 2014, Chitinophaga sp. JS13-10, DSM 24787, JCM 15440, KACC 12952, strain JS13-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.