STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO48767.1Periplasmic chaperone for outer membrane proteins Skp. (178 aa)    
Predicted Functional Partners:
SIO48755.1
Beta-barrel assembly machine subunit BamA.
 
  
 0.722
SIO10583.1
Outer membrane protein assembly factor BamA.
 
  
 0.686
SIN79643.1
Putative negative regulator of RcsB-dependent stress response.
  
  
 0.684
SIO48761.1
Periplasmic chaperone for outer membrane proteins Skp.
 
    
0.677
SIO45772.1
Peptidyl-prolyl cis-trans isomerase D.
  
  
 0.637
SIN67127.1
Lipopolysaccharide-assembly.
  
     0.634
SIO56023.1
Hypothetical protein.
  
     0.626
SIN73082.1
Protein of unknown function.
  
     0.619
SIO15918.1
Protein of unknown function.
  
     0.614
SIO47188.1
Tetratricopeptide repeat-containing protein.
  
  
 0.605
Your Current Organism:
Chitinophaga niabensis
NCBI taxonomy Id: 536979
Other names: C. niabensis, Chitinophaga niabensis Weon et al. 2009 emend. Proenca et al. 2014, Chitinophaga sp. JS13-10, DSM 24787, JCM 15440, KACC 12952, strain JS13-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.