STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO49016.1Protein of unknown function. (599 aa)    
Predicted Functional Partners:
SIO49012.1
Methyltransferase domain-containing protein.
       0.697
SIN75565.1
Sialidase-1.
 
 
 0.520
SIN86134.1
CubicO group peptidase, beta-lactamase class C family.
    
 0.494
SIO44867.1
Beta-glucosidase.
    
 0.494
SIO49008.1
Hypothetical protein.
       0.478
SIN71721.1
Sialidase-1.
 
 
 0.435
SIN69095.1
Exodeoxyribonuclease-3.
  
     0.434
SIO07777.1
Alpha/beta hydrolase family protein.
  
     0.422
SIN80368.1
alpha-L-fucosidase 2.
  
     0.418
fcl-2
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
       0.416
Your Current Organism:
Chitinophaga niabensis
NCBI taxonomy Id: 536979
Other names: C. niabensis, Chitinophaga niabensis Weon et al. 2009 emend. Proenca et al. 2014, Chitinophaga sp. JS13-10, DSM 24787, JCM 15440, KACC 12952, strain JS13-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.