Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIO04883.1 | SIO12049.1 | SAMN04488055_2685 | SAMN04488055_3031 | Outer membrane transport energization protein ExbB. | TonB family C-terminal domain-containing protein. | 0.829 |
SIO04883.1 | SIO52109.1 | SAMN04488055_2685 | SAMN04488055_5169 | Outer membrane transport energization protein ExbB. | Biopolymer transport protein ExbD. | 0.920 |
SIO04883.1 | SIO52112.1 | SAMN04488055_2685 | SAMN04488055_5170 | Outer membrane transport energization protein ExbB. | Biopolymer transport protein ExbD. | 0.920 |
SIO04883.1 | SIO52118.1 | SAMN04488055_2685 | SAMN04488055_5171 | Outer membrane transport energization protein ExbB. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.729 |
SIO04883.1 | SIO52530.1 | SAMN04488055_2685 | SAMN04488055_5248 | Outer membrane transport energization protein ExbB. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.703 |
SIO04883.1 | SIO55577.1 | SAMN04488055_2685 | SAMN04488055_5789 | Outer membrane transport energization protein ExbB. | Protein TonB. | 0.658 |
SIO12049.1 | SIO04883.1 | SAMN04488055_3031 | SAMN04488055_2685 | TonB family C-terminal domain-containing protein. | Outer membrane transport energization protein ExbB. | 0.829 |
SIO12049.1 | SIO52104.1 | SAMN04488055_3031 | SAMN04488055_5168 | TonB family C-terminal domain-containing protein. | Outer membrane transport energization protein ExbB. | 0.805 |
SIO12049.1 | SIO52109.1 | SAMN04488055_3031 | SAMN04488055_5169 | TonB family C-terminal domain-containing protein. | Biopolymer transport protein ExbD. | 0.746 |
SIO12049.1 | SIO52112.1 | SAMN04488055_3031 | SAMN04488055_5170 | TonB family C-terminal domain-containing protein. | Biopolymer transport protein ExbD. | 0.711 |
SIO12049.1 | SIO52118.1 | SAMN04488055_3031 | SAMN04488055_5171 | TonB family C-terminal domain-containing protein. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.591 |
SIO12049.1 | SIO52530.1 | SAMN04488055_3031 | SAMN04488055_5248 | TonB family C-terminal domain-containing protein. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.607 |
SIO12049.1 | SIO55577.1 | SAMN04488055_3031 | SAMN04488055_5789 | TonB family C-terminal domain-containing protein. | Protein TonB. | 0.613 |
SIO19320.1 | SIO19337.1 | SAMN04488055_3388 | SAMN04488055_3389 | Hypothetical protein. | Hypothetical protein. | 0.422 |
SIO19320.1 | SIO19360.1 | SAMN04488055_3388 | SAMN04488055_3390 | Hypothetical protein. | Phosphate ABC transporter substrate-binding protein, PhoT family. | 0.854 |
SIO19320.1 | SIO52104.1 | SAMN04488055_3388 | SAMN04488055_5168 | Hypothetical protein. | Outer membrane transport energization protein ExbB. | 0.739 |
SIO19320.1 | SIO52109.1 | SAMN04488055_3388 | SAMN04488055_5169 | Hypothetical protein. | Biopolymer transport protein ExbD. | 0.786 |
SIO19320.1 | SIO52112.1 | SAMN04488055_3388 | SAMN04488055_5170 | Hypothetical protein. | Biopolymer transport protein ExbD. | 0.767 |
SIO19320.1 | SIO52118.1 | SAMN04488055_3388 | SAMN04488055_5171 | Hypothetical protein. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.670 |
SIO19320.1 | SIO52530.1 | SAMN04488055_3388 | SAMN04488055_5248 | Hypothetical protein. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.613 |
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