STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO52324.1Iron complex outermembrane recepter protein. (780 aa)    
Predicted Functional Partners:
SIO52319.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.894
SIO54648.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.698
SIO52314.1
Two component regulator propeller.
       0.658
SIO53341.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.607
SIO12571.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.555
SIO14485.1
Protein of unknown function.
  
   0.553
SIO03284.1
FecR protein.
  
   0.544
SIN65869.1
Protein of unknown function.
  
   0.530
SIO41766.1
FecR protein.
  
   0.527
SIO14920.1
Protein of unknown function.
  
   0.524
Your Current Organism:
Chitinophaga niabensis
NCBI taxonomy Id: 536979
Other names: C. niabensis, Chitinophaga niabensis Weon et al. 2009 emend. Proenca et al. 2014, Chitinophaga sp. JS13-10, DSM 24787, JCM 15440, KACC 12952, strain JS13-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.