STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC98388.1Hypothetical protein; KEGG: ddi:DDB0230105 1.4e-06 putative CLK family kinase K08287; Psort location: OuterMembrane, score: 9.49. (379 aa)    
Predicted Functional Partners:
EEC98390.1
Sigma-70 region 2; KEGG: shn:Shewana3_0763 5.6e-19 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.759
EEC97949.1
Hypothetical protein.
  
     0.757
EEC98217.1
Hypothetical protein.
  
     0.727
EEC98138.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
  
     0.695
EEC94796.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.690
EEC98389.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.687
EEC97784.1
Repeat protein; KEGG: chu:CHU_1978 0.00050 flu; probable N-acetylglucosamine-1-phosphate uridyltransferase K00972.
  
     0.679
EEC98145.1
Hypothetical protein.
  
     0.659
EEC94483.1
SusD family protein.
  
     0.656
EEC98345.1
SusD family protein.
  
     0.648
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.