STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC98045.1MFS transporter, SP family; KEGG: cal:orf19.3526 4.3e-44 ITR2; myo-inositol transporter K08140; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (457 aa)    
Predicted Functional Partners:
EEC98044.1
Tetratricopeptide repeat protein; KEGG: eci:UTI89_C2868 2.2e-214 yphG; hypothetical protein YphG K00754; Psort location: Cytoplasmic, score: 8.96.
 
     0.841
EEC98043.1
Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: aba:Acid345_0579 3.6e-19 beta-glucuronidase K01195; Belongs to the glycosyl hydrolase 2 family.
       0.631
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.598
EEC98047.1
KEGG: bcz:BCZK3497 2.9e-10 adaA; transcriptional regulator, AraC family K00567.
 
   
 0.482
EEC98042.1
Hypothetical protein.
       0.457
EEC98046.1
Hypothetical protein.
       0.436
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.