STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC97990.1Transporter gate domain protein; KEGG: bba:Bd1715 0.0013 ppa; vacuolar-type H+-pyrophosphatase K01507; Psort location: CytoplasmicMembrane, score: 10.00. (410 aa)    
Predicted Functional Partners:
EEC97991.1
Nucleotidyltransferase substrate-binding family protein; KEGG: ctc:CTC01416 6.8e-07 nucleotidyltransferase.
       0.634
EEC97992.1
Nucleotidyltransferase domain protein; KEGG: pca:Pcar_0897 7.4e-12 type I site-specific restriction-modification system R (restriction) K01153; Psort location: Cytoplasmic, score: 8.96.
       0.634
EEC97010.1
Putative cytochrome c-type biogenesis protein CcsB; KEGG: sat:SYN_00150 6.7e-31 heme export protein apocytochrome heme-lyase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.527
EEC94575.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
  
  
 0.527
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.514
EEC97989.1
Hypothetical protein; KEGG: rba:RB7907 7.1e-67 probable lipase K01066.
       0.509
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
       0.508
EEC96191.1
NOL1/NOP2/sun family protein; KEGG: spa:M6_Spy0946 5.0e-50 putative 23S rRNA m(5)C methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96.
 
    0.464
EEC96498.1
SpoIID/LytB domain protein; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.451
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.446
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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