Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEC97564.1OmpA family protein; KEGG: bxe:Bxe_A4171 6.8e-05 putative cytochrome c oxidase K00403; Psort location: OuterMembrane, score: 9.92. (227 aa)    
Predicted Functional Partners:
EEC97563.1
Hypothetical protein.
       0.693
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
   0.477
EEC96766.1
Hypothetical protein; KEGG: ecu:ECU07_0360 3.7e-15 07_0360, SER/THR/TYR PROTEIN KINASE, IPL1_yeast, gene found by Glimmer K00870; Psort location: Cytoplasmic, score: 8.96.
   
   0.475
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
 
   
 0.473
EEC98086.1
Hypothetical protein.
   
 
 0.423
EEC95559.1
Outer membrane lipoprotein carrier protein LolA.
  
 
 0.419
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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