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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC97252.1Hypothetical protein. (357 aa)    
Predicted Functional Partners:
EEC97253.1
DNA binding domain, excisionase family.
 
     0.849
EEC98504.1
Hypothetical protein; KEGG: rbe:RBE_1421 0.0083 holC; DNA polymerase III chi subunit HolC K02339.
 
     0.740
EEC97251.1
Hypothetical protein; KEGG: bsu:BG10313 1.0e-06 dnaG, dnaE; DNA primase K02316; Psort location: Cytoplasmic, score: 8.96.
 
     0.733
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.714
EEC95418.1
Hypothetical protein.
  
     0.708
EEC98507.1
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.699
EEC97173.1
Putative plasmid recombination enzyme; Psort location: Cytoplasmic, score: 8.96.
  
     0.696
EEC95154.1
Hypothetical protein.
 
 0.673
EEC95153.1
DNA binding domain, excisionase family.
  
     0.668
EEC96765.1
Putative plasmid recombination enzyme; Psort location: Cytoplasmic, score: 8.96.
  
     0.663
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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