STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypDHydrogenase expression/formation protein HypD; Psort location: Cytoplasmic, score: 8.96. (370 aa)    
Predicted Functional Partners:
hypC
Hydrogenase assembly chaperone HypC/HupF; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.999
EEC97171.1
KEGG: cch:Cag_0556 6.2e-52 hypE; hydrogenase expression/formation protein HypE K04655; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.999
hypB
Hydrogenase accessory protein HypB; KEGG: reh:H16_A1087 2.1e-07 ureG; UreA amidohydrolase (urease) regulatory and maturation protein UreG; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.946
hypF
Carbamoyltransferase HypF; KEGG: pmu:PM0396 1.7e-06 acylphosphatase, putative K01512; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.932
hypA
Putative hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.895
EEC97161.1
KEGG: dar:Daro_3970 6.1e-22 peptidase M52, hydrogen uptake protein:peptidase M52, hydrogenase expression/formation protein:peptidase M52, hydrogenase maturation peptidase K08567; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.568
EEC97165.1
KEGG: plt:Plut_1447 3.1e-176 hydrogenase large chain K06281; Psort location: Periplasmic, score: 9.44.
 
 
 0.553
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
     
 0.526
EEC97159.1
Hypothetical protein; KEGG: dps:DP0575 5.5e-07 hynA; probable Ni/Fe-hydrogenase, large subunit K06281; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.437
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.