STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC96411.1Hypothetical protein. (50 aa)    
Predicted Functional Partners:
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.921
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.905
rplV
50S ribosomal protein L22.
  
 
   0.765
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
   0.748
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
   0.715
rpmC
Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
   0.710
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
   0.710
EEC96408.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.680
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.672
rpmI
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
    
   0.672
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.