STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC96183.1KEGG: pgi:PG1315 1.1e-54 slyD; peptidyl-prolyl cis-trans isomerase SlyD, FKBP-type K03775; Psort location: Cytoplasmic, score: 8.96. (192 aa)    
Predicted Functional Partners:
rpsB
Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.96; Belongs to the universal ribosomal protein uS2 family.
   
   0.882
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.873
hypB
Hydrogenase accessory protein HypB; KEGG: reh:H16_A1087 2.1e-07 ureG; UreA amidohydrolase (urease) regulatory and maturation protein UreG; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.793
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
    0.652
EEC96182.1
Aminotransferase, class I/II; KEGG: bfs:BF0911 5.8e-120 putative aminotransferase K00842.
       0.552
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.523
EEC97932.1
Hypothetical protein; KEGG: hpa:HPAG1_0117 6.1e-22 hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.519
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
  
 0.466
icd
Isocitrate dehydrogenase, NADP-dependent; KEGG: zmo:ZMO0544 6.9e-140 citC; isocitrate dehydrogenase K00031; Psort location: Cytoplasmic, score: 9.26.
  
    0.440
EEC96439.1
Hypothetical protein; KEGG: bfr:BF3754 3.6e-10 isocitrate dehydrogenase K00031.
  
    0.440
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.