STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspAPutative signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. (204 aa)    
Predicted Functional Partners:
EEC95611.1
Putative RNA polymerase-binding protein DksA.
 
    0.833
EEC95609.1
Hypothetical protein.
       0.793
EEC95612.1
Anticodon-binding domain protein; KEGG: bfr:BF2275 9.7e-253 isoleucyl-tRNA synthetase K01870; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.748
ileS
isoleucine--tRNA ligase; KEGG: bfs:BF2367 4.5e-255 ileS; isoleucyl-tRNA synthetase K01870; Psort location: Cytoplasmic, score: 9.26.
 
  
 0.672
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
   
 0.630
rseP
RIP metalloprotease RseP; KEGG: bfr:BF3698 1.5e-146 membrane-associated zinc metalloprotease; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.487
EEC94130.1
PAP2 family protein; KEGG: btk:BT9727_2194 6.5e-10 probable phosphatase, PAP2 superfamily; possible bacitracin transport permease K01112; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
  0.485
EEC94622.1
Outer membrane protein.
  
   
 0.482
EEC98357.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.453
yfiO
Outer membrane assembly lipoprotein YfiO.
 
   
 0.450
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.