STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC95587.1Cold-shock DNA-binding domain protein; KEGG: cff:CFF8240_1146 0.0066 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K01957; Psort location: Cytoplasmic, score: 8.96. (154 aa)    
Predicted Functional Partners:
EEC96513.1
Hypothetical protein.
  
 
 0.913
EEC95588.1
Hypothetical protein; KEGG: hpa:HPAG1_0813 1.9e-11 RNA binding protein K01802.
   
 0.905
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.899
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.894
EEC96370.1
Hypothetical protein; KEGG: hpa:HPAG1_0813 1.0e-12 RNA binding protein K01802.
   
 0.847
EEC96117.1
Hypothetical protein; KEGG: hpa:HPAG1_0813 2.3e-15 RNA binding protein K01802; Psort location: Cytoplasmic, score: 8.96.
   
 0.847
EEC97541.1
Hypothetical protein; KEGG: hpa:HPAG1_0813 3.4e-12 RNA binding protein K01802.
   
 0.846
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.783
rpmA
Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.735
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.733
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.