STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC95553.1Site-specific recombinase, phage integrase family; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family. (409 aa)    
Predicted Functional Partners:
EEC95420.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.693
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
  0.619
EEC95301.1
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.609
EEC95025.1
DNA binding domain, excisionase family.
  
     0.566
EEC97769.1
RteC protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.563
EEC95075.1
DNA binding domain, excisionase family.
  
     0.545
EEC95076.1
DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.96.
  
     0.517
EEC97253.1
DNA binding domain, excisionase family.
  
     0.515
EEC95078.1
Hypothetical protein; KEGG: msy:MS53_0453 7.9e-06 dnaG; DNA primase K02316; Psort location: Cytoplasmic, score: 8.96.
  
     0.485
EEC96211.1
Hypothetical protein; KEGG: ctc:CTC02011 0.0020 DNA primase K02316.
  
     0.472
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.